Jim Hester
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Videos / Posts
Setting ggplot2 default color scales
ggplot2 is a very nice R plotting library, however some people do not like the default color scales for plots. You can explicitly set …
Mar 11, 2013
Parsing gff files with Rcpp for use with ggbio
The ggbio package is a great tool to use for visualizing next generation sequencing data. It combines the graphing power of the ggplot2 …
Jan 22, 2013
Plotting manual fitted model predictions using ggplot
ggplot provides convenient smoothing functions for fitting models to data with the built in geom_smooth and stat_smooth methods. …
Dec 26, 2012
One liner for perl dependencies
Dec 18, 2012
Setting up a local cpan using cpanminus without root access
When asked why colleagues do not use perl modules in their work, often the response is that they do not know how to install them …
Dec 17, 2012
On the fly bam to sam conversion using named pipes
In bioinformatics the common format developed for storing short read alignments is the SAM format which has a binary representation and …
Dec 3, 2012
R: Parsing Fasta Files
As a quick follow-up to my previous posts about parsing fasta files in perl, python, and ruby I wanted to make a quick note about a …
Nov 27, 2012
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